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SRX2737704: GSM2578868: Negative RNA-seq; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 6.2M spots, 1.2G bases, 737.6Mb downloads

Submitted by: NCBI (GEO)
Study: DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A [RNA-Seq]
show Abstracthide Abstract
We demonstrate that dCas9-SunTag-DNMT3A dramatically increased CpG methylation at the HOXA5 locus in human embryonic kidney 293T cells (HEK293T). Furthermore, using a single sgRNA, dCas9-SunTag-DNMT3A was able to methylate a 4.5 kb genomic region and repress HOXA5 gene expression. Reduced representation bisulfite sequencing (RRBS) and RNA-seq showed that dCas9-SunTag-DNMT3A methylated regions of interest with minimal impact on the global DNA methylome and transcriptome. Overall design: I)PCR amplicon deep sequencing of dCas9-SunTag-DNMT3A treated HEK2937 samples using Illumina Nextseq sequencing system. II) Reduced representation bisulfited sequencing (RRBS) of plasmid transfected HEK 293T cells using Illumina Hiseq2000 sequencing system. III) Whole genome bisulfite sequencing of dCas9-SunTag-DNMT3A treated HEK2937 samples. IV) RNA sequencing of dCas9-SunTag-DNMT3A treated HEK2937 samples
Sample: Negative RNA-seq
SAMN06758255 • SRS2124950 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Qiagen Rneasy Plus micro kit Truseq stranded mRNA kit
Experiment attributes:
GEO Accession: GSM2578868
Links:
Runs: 1 run, 6.2M spots, 1.2G bases, 737.6Mb
Run# of Spots# of BasesSizePublished
SRR54488556,170,9031.2G737.6Mb2017-08-22

ID:
3946166

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